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فهرست مطالب: Preface...................vContributors................... . ix 1 Interrogating the Human Diplome: Computational Methods, Emerging Applications, and Challenges............ . . . 1 Agnes P. Chan, Yongwook Choi, Aditya Rangan, Guangfa Zhang, Avijit Podder, Michael Berens, Sunil Sharma, Patrick Pirrotte, Sara Byron, Dave Duggan, and Nicholas J. Schork 2 Targeted Locus Amplification and Haplotyping......... 31 Juliet W. Lefferts, Vera Boersma, Marne C. Hagemeijer, Karima Hajo, Jeffrey M. Beekman, and Erik Splinter 3 Full-Length Transcript Phasing with Third-Generation Sequencing.. . . . . 49 Nenad Svrzikapa and Ramakrishna Boyanapalli 4 Large-Scale Complete Sequencing and Haplotyping of 1–10 kb DNA Molecules Using Short Massively Parallel Reads........ 59 Youtao Liu, Fei Fan, Radoje Drmanac, Brock A. Peters, and Ou Wang 5 Accurate Sequencing and Haplotyping from 10 Cells Using Long Fragment Read (LFR) Technology.......... . . . . . 71 Mark A. McElwain and Brock A. Peters 6 Low-Cost Genome-Scale Phasing with Barcode-Linked Sequencing.. . . . 85 David Redin 7 A Simple Cost-Effective Method for Whole-Genome Sequencing, Haplotyping, and Assembly............ . . . . 101 Ou Wang, Xiaofang Cheng, Radoje Drmanac, and Brock A. Peters 8 Read-Based Phasing and Analysis of Phased Variants with WhatsHap... . . 127 Marcel Martin, Peter Ebert, and Tobias Marschall 9 HapCUT2: A Method for Phasing Genomes Using Experimental Sequence Data................. . 139 Vikas Bansal 10 Determining Complete Chromosomal Haplotypes by mLinker..... 149 Sumit Sinha and Cheng-Zhong Zhang 11 Haplotyping-Assisted Diploid Assembly and Variant Detection with Linked Reads.............. . . . . . 161 Yunfei Hu, Chao Yang, Lu Zhang, and Xin Zhou 12 Chromosome-Length Haplotypes with StrandPhaseR and Strand-seq.. . . 183 Vincent C. T. Hanlon, David Porubsky, and Peter M. Lansdorp 13 Gamete Binning to Achieve Haplotype-Resolved Genome Assembly.. . . . 201 Hequan Sun, Jose´ A. Campoy, and Korbinian Schneeberger vii viii Contents 14 Phasing DNA Methylation............ . . . . . 219 Vahid Akbari and Steven J. M. Jones 15 Analysis of 1276 Haplotype-Resolved Genomes Allows Characterization of Cis- and Trans-Abundant Genes.......... . . . . 237 Margret R. Hoehe and Ralf Herwig 16 Phased Genome Assemblies............ . . . . 273 Jorge Duitama 17 Haplotype-Assisted Noninvasive Prenatal Diagnosis of Genetic Diseases by Massively Parallel Sequencing of Maternal Plasma Cell-Free DNA... . . 287 Jia Ju, Fengxia Su, Chao Chen, Jun Sun, and Ya Gao Index.................... 295 مشخصات فایل |
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| عنوان (Title): | Haplotyping_ Methods and Protocols |
| نام فایل (File name): | 983-www.GeneProtocols.ir-Haplotyping_ Methods and Protocols-Humana Press (2023).pdf |
| عنوان فارسی (Title in Persian): |
هاپلوتایپینگ _ روش ها و پروتکل ها
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| ایجاد کننده: | Brock A. Peters, Radoje Drmanac |
| زبان (Language): | انگلیسی English |
| سال انتشار: | 2023 |
| شابک ISBN: | 9781071628188 |
| نوع سند (Doc. type): | کتاب |
| فرمت (File extention): | |
| حجم فایل (File size): | 9.71 مگابایت |
| تعداد صفحات (Book length in pages): | 304 |
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