-
قابل دانلود از چهارشنبه, ۶ ارديبهشت ۱۴۰۲
|
فهرست مطالب: Preface . . . . . . . . . . . . . . vAcknowledgments . . . . . . . . . . . vii Contributors . . . . . . . . . . . . . . . xiii PART I COMPARATIVE GENOMICS TO STUDY (PALEO-)POLYPLOIDY 1 Inference of Ancient Polyploidy from Genomic Data . . . . 3 Hengchi Chen and Arthur Zwaenepoel 2 Navigating the CoGe Online Software Suite for Polyploidy Research . . . . . . . . . . . . . 19 Victor A. Albert and Trevor J. Krabbenhoft 3 Inference of Ancient Polyploidy Using Transcriptome Data . . . 47 Jia Li, Yves Van de Peer, and Zhen Li 4 POInT: Modeling Polyploidy in the Era of Ubiquitous Genomics . . 77 Gavin C. Conant 5 Applying Machine Learning to Classify the Origins of Gene Duplications . . . . . . . . . . . . 91 Michael T. W. McKibben and Michael S. Barker PART II PHYLOGENETICS TO STUDY POLYPLOIDY 6 Phasing Gene Copies into Polyploid Subgenomes Using a Bayesian Phylogenetic Approach . . . . . . . . . . 123 William A. Freyman and Carl J. Rothfels 7 Constraining Whole-Genome Duplication Events in Geological Time . . . . . . . . . 139 James W. Clark and Philip C. J. Donoghue 8 SCORPiOs, a Novel Method to Reconstruct Gene Phylogenies in the Context of a Known WGD Event . . . . . . . . . . 155 Elise Parey, Hugues Roest Crollius, and Camille Berthelot 9 Inferring Chromosome Number Changes Along a Phylogeny Using chromEvol . . . . . . . . . . 175 Anna Rice and Itay Mayrose 10 PURC Provides Improved Sequence Inference for Polyploid Phylogenetics and Other Manifestations of the Multiple-Copy Problem . . . . . 189 Peter Schafran, Fay-Wei Li, and Carl J. Rothfels ixx Contents PART III ANALYSIS OF GENE EXPRESSION AND REGULATION IN POLYPLOIDS 11 Analyses of Genome Regulatory Evolution Following Whole-Genome Duplication Using the Phylogenetic EVE Model . . . . . . . 209 Ksenia Arzumanova, Rori V. Rohlfs, Lars Grønvold, Marius A. Strand, Torgeir R. Hvidsten, and Simen R. Sandve 12 Beyond Transcript Concentrations: Quantifying Polyploid Expression Responses per Biomass, per Genome, and per Cell with RNA-Seq . . 227 Jeremy E. Coate 13 A Robust Methodology for Assessing Homoeolog-Specific Expression . . . . . . . . . . . 251 J. Lucas Boatwright PART IV POPULATION GENOMICS APPROACHES TO STUDY POLYPLOIDY 14 Analyzing Autopolyploid Genetic Data Using GenoDive . . . . . 261 Patrick G. Meirmans 15 Inference of Polyploid Origin and Inheritance Mode from Population Genomic Data . . . . . . . . . . . . . 279 Alison Dawn Scott, Jozefien D. Van de Velde, and Polina Yu Novikova 16 Population Genomic Analysis of Diploid-Autopolyploid Species . . . . 297 Magdalena Bohutı´nska´, Jakub Vlcˇek, Patrick Monnahan, and Filip Kola´rˇ 17 Inferring the Demographic History and Inheritance Mode of Tetraploid Species Using ABC . . . . . . . . . . . 325 Camille Roux, Xavier Vekemans, and John Pannell PART V EXPERIMENTAL APPROACHES TO STUDY POLYPLOIDY 18 Studying Whole-Genome Duplication Using Experimental Evolution of Chlamydomonas . . . . . . . . . 351 Quinten Bafort, Lucas Prost, Eylem Aydogdu, Antoine Van de Vloet, Griet Casteleyn, Yves Van de Peer, and Olivier De Clerck 19 Studying Whole-Genome Duplication Using Experimental Evolution of Spirodela polyrhiza . . . . . . . . . . . . 373 Tian Wu, Annelore Natran, Lucas Prost, Eylem Aydogdu, Yves Van de Peer, and Quinten Bafort 20 Experimental Approaches to Generate and Isolate Human Tetraploid Cells . . . . . . . . . . . . 391 Sara Vanessa Bernhard, Simon Gemble, Renata Basto, and Zuzana Storchova 21 Measuring Cellular Ploidy In Situ by Light Microscopy . . . . . . . 401 Delisa E. Clay, Benjamin M. Stormo, and Donald T. Fox 22 Using Mosaic Cell Labeling to Visualize Polyploid Cells in the Drosophila Brain . . . . . . . . . . 413 Shyama Nandakumar and Laura ButtittaContents xi PART VI SEQUENCING, ASSEMBLING, EDITING AND ENGINEERING POLYPLOID GENOMES 23 Sequencing and Assembly of Polyploid Genomes . . . . . . . 429 Yibin Wang, Jiaxin Yu, Mengwei Jiang, Wenlong Lei, Xingtan Zhang, and Haibao Tang 24 Genome Editing by CRISPR/Cas9 in Polyploids . . . . . . . 459 Carlos Sa´nchez-Gomez, David Pose´, and Carmen Martı´n-Pizarro 25 Developing a CRISPR System in Nongenetic Model Polyploids . . . . 475 Shengchen Shan, Bing Yang, Bernard A. Hauser, Pamela S. Soltis, and Douglas E. Soltis 26 Efficiently Editing Multiple Duplicated Homeologs and Alleles for Recurrent Polyploids . . . . . . . . . 491 Rui-Hai Gan, Li Zhou, and Jian-Fang Gui Index . . . . . . . . . . . . . . . 513 مشخصات فایل |
|
| عنوان (Title): | Polyploidy_ Methods and Protocols |
| نام فایل (File name): | 943-www.GeneProtocols.ir-Polyploidy_ Methods and Protocols-Humana Press (2023).pdf |
| عنوان فارسی (Title in Persian): | پلی پلوئیدی - روشها و پروتکل ها |
| ایجاد کننده: | Yves Van de Peer |
| زبان (Language): | انگلیسی English |
| سال انتشار: | 2023 |
| شابک ISBN: | 1071625608, 9781071625606 |
| نوع سند (Doc. type): | کتاب |
| فرمت (File extention): | |
| حجم فایل (File size): | 27.1 مگابایت |
| تعداد صفحات (Book length in pages): | 514 |
پس از پرداخت، دانلود فایل آغاز می شود
درباره درگاه پرداخت نکست پی بیشتر بدانید
تمامی درگاه های پرداخت ژنـ پروتکل توسط شرکت دانش بنیان نکست پی پشتیبانی می شود. نکست پی دارای مجوز رسمی پرداختیاری به شماره 1971/ص/98 ، از شرکت شاپرک و بانک مرکزی جمهوری اسلامی ایران و دارای نماد اعتماد در حوزه (متمرکزکنندگان پرداخت) از مرکز توسعه تجارت الکترونیکی وزارت صنعت معدن و تجارت است.
T-student 